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Egg Muffins with Cottage Cheese

February 25, 2025 by Lydia 8 Comments

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What are egg muffins?

Egg muffins with cottage cheese aren’t like your standard “muffin.” Yes, they contain flour, eggs, and baking powder, but that’s about the only thing egg muffins and regular muffins have in common. Egg muffins are a protein-rich, egg bite.

Egg muffins with cottage cheese on a plate with a fork, next to some brown eggs.

They are so easy to make and are even more delicious on the go! Egg muffins are perfect for people who are busy and need a nutrient dense food that can be prepared ahead of time.

What do egg muffins with cottage cheese taste like?

Depending on what you put in your egg muffins with cottage cheese, the taste can vary. This recipe calls for almond flour, tomato, basil, gouda, and more.

I believe that the almond flour, tomato, basil, and gouda, really make the egg muffins taste fresh and light. Of course, there’s some variations to the ingredients, which I will elaborate more on down below, so don’t worry if something doesn’t sound good to you!

Are egg muffins healthy?

These egg muffins with cottage cheese are definitely healthy! Here’s why:

Protein-Rich- These muffins are made with eggs, cottage cheese, shredded cheese, and collagen or protein powder. So these muffins are filling and great for the muscles!

Nutritious- The basil, spinach, and tomatoes add antioxidants, vitamins, and minerals.

Low Carbs- If you use almond flour instead of conventional flour, there’s fiber and the almond flour will help with blood sugar stability.

No Refined Sugar- These muffins have no added sugar or sweetener.

Balanced Micros- In these muffins, you get a blend of healthy fats, protein, and complex carbs that help you to stay satisfied for longer!

A bowl with 6 large, brown eggs.

Why I love this recipe

I love egg muffins with cottage cheese because they are so easy to whip up and store! Not to mention, they are filling and great for when you are on the go. Lastly, they are super tasty!

Why collagen?

As we age, it gets harder and harder for our bodies to produce collagen like they once did. So, supplementing with collagen is a great way to ensure that our bodies get the collagen needed.

Find out more about collagen here.

Ingredient add-in’s for egg muffins with cottage cheese

Some delicious add-in’s to consider:

bacon bits

diced ham

crumbled sausage

diced onion- sauteed

black olives

bell pepper

mushrooms- sauteed and chopped

Ingredient Variations

Collagen-> Protein powder

Gouda cheese-> Cheddar cheese, or any type of shredded cheese

Almond flour-> Whole wheat flower, or all-purpose flour

Cottage cheese-> Greek yogurt

All of these variations can be substituted in a 1:1 ratio.

Egg muffins with cottage cheese in a silicone muffin pan fresh out of the oven.

Seasonal Variations

If you’d like to get creative with the egg muffins or want them to taste fresh year round, consider cooking with seasonal ingredients. For instance, in the spring try fresh parsley or chives. In the summer, you could do zucchini. In the fall, try Swiss chard or kale. Lastly, in the winter consider carrots or maybe beets.

Serving ideas for egg muffins with cottage cheese

Breakfast: Serve with a side of fresh fruit, like blueberries or grapes, and a slice of toast.

Brunch: For brunch, maybe some Greek yogurt or oatmeal.

Lunch: For lunch, try serving the egg muffins with a hearty, creamy soup such as tomato or cheesy broccoli soup.

Supper: To make the egg muffins stretch a little further, try incorporating some fried rice or quinoa.

Snack: You can jazz up the egg muffins with some of you favorite hot sauce, sour cream, or even salsa.

Drinks: Really any type of drink would probably pair well with the egg muffins, but here are some ideas:

Smoothies, fruit juice, coffee, tea, or sparkling water

A plate with a fork of egg muffins with cottage cheese next to a glass of orange juice.

Equipment needed for egg muffins with cottage cheese

Medium mixing bowls

Measuring cups and spoons

Knife/cutting board

Muffin pan- small-medium sized cavities

Ingredients

dry ingredients:

1 cup of almond flour- can also use all-purpose or whole wheat

1/2 cup unflavored collagen or protein powder- optional

1/2 teaspoon garlic powder- optional

1 teaspoon of baking powder

salt and pepper to taste

dairy/wet ingredients:

2 large eggs

1/2 cup cottage cheese

1/2 cup of milk

1/2 cup of shredded gouda, or cheese of choice

veggies:

1/2 cup of fresh spinach, finely chopped

1/4 cup of fresh basil, finely chopped

1/2 cup of cherry tomatoes, diced

Ingredients for egg muffins with cottage cheese.

How to make egg muffins with cottage cheese

Start by preheating the oven to 350 degrees Fahrenheit. Line or grease a muffin tin if need be and set aside.

Next, add the eggs, cottage cheese, milk, and collagen to a mixing bowl. Whisk together and set aside.

A wire whisk in a glass bowl of egg mixture.

Then, add the almond flour, garlic powder, baking powder, salt, and pepper to a mixing bowl. Mix together and ensure that there’s no clumps.

An almond flour mixture in a glass bowl.

Now fold the veggies and the cheese into the flour mixture. Give it a good mix and then add the wet ingredients and mix again until everything is well combined.

Egg muffins with cottage cheese muffin batter in a metal bowl with a spoon.

Next, spoon the egg muffin batter into the muffin pan. Fill each cavity about half to 2/3 of the way full.

Egg muffins with cottage cheese batter in a silicone muffin tin.

Then, place the egg muffins with cottage cheese into the oven for 22-25 minutes. Or until the egg muffins are golden and a toothpick comes out clean when inserted.

Fully baked egg muffins with cottage cheese in a silicone muffin tin.

Finally, enjoy your egg muffins with cottage cheese! Serve with orange juice, coffee, or your favorite drink and enjoy!

Egg muffins with cottage cheese on a light blue cake stand.

How to store egg muffins with cottage cheese

Short term:

You can store the egg muffins short term in the fridge for about 4 days in an airtight container.

Long term:

To store long term, use parchment paper to separate the layers of egg muffins and place the muffins into a freezer safe Ziplock bag or container. They will stay good for up to 3 months in the freezer.

To reheat, place them into the microwave or oven until fully heated.

Egg Muffins with Cottage Cheese

Delicious, protein-rich egg muffins perfect for on the go!
5 from 1 vote
Print Recipe Pin Recipe
Prep Time 15 minutes mins
Cook Time 25 minutes mins
Total Time 40 minutes mins
Course Appetizer, Breakfast, Snack
Cuisine American
Servings 6 people

Equipment

  • Medium mixing bowls
  • Measuring cups and spoons
  • Knife/cutting board
  • Muffin pan- small-medium sized cavities

Ingredients
  

  • dry ingredients:
  • 1 cup of almond flour- can also use all-purpose or whole wheat
  • 1/2 cup unflavored collagen or protein powder- optional
  • 1/2 teaspoon garlic powder- optional
  • 1 teaspoon of baking powder
  • salt and pepper to taste
  • dairy/wet ingredients:
  • 2 large eggs
  • 1/2 cup cottage cheese
  • 1/2 cup of milk
  • 1/2 cup of shredded gouda or cheese of choice
  • veggies:
  • 1/2 cup of fresh spinach finely chopped
  • 1/4 cup of fresh basil finely chopped
  • 1/2 cup of cherry tomatoes diced

Instructions
 

  • How to make egg muffins with cottage cheese
  • Start by preheating the oven to 350 degrees Fahrenheit. Line or grease a muffin tin if need be and set aside.
  • Next, add the eggs, cottage cheese, milk, and collagen to a mixing bowl. Whisk together and set aside.
  • Then, add the almond flour, garlic powder, baking powder, salt, and pepper to a mixing bowl. Mix together and ensure that there’s no clumps.
  • Now fold the veggies and the cheese into the flour mixture. Give it a good mix and then add the wet ingredients and mix again until everything is well combined.
  • Next, spoon the egg muffin batter into the muffin pan. Fill each cavity about half to 2/3 of the way full.
  • Then, place the egg muffins with cottage cheese into the oven for 22-25 minutes. Or until the egg muffins are golden and a toothpick comes out clean when inserted.
  • Finally, enjoy your egg muffins with cottage cheese! Serve with orange juice, coffee, or your favorite drink and enjoy!

Notes

How to store egg muffins with cottage cheese
Short term:
You can store the egg muffins short term in the fridge for about 4 days in an airtight container.
Long term:
To store long term, use parchment paper to separate the layers of egg muffins and place the muffins into a freezer safe Ziplock bag or container. They will stay good for up to 3 months in the freezer.
To reheat, place them into the microwave or oven until fully heated.
Additional notes
Any type of cottage cheese should work, but I like to get small curd cottage cheese.
I recommend getting large, fresh eggs. Also, eggs that are either pasture-raised or free-range tend to taste better and be better for you! Another good option would be organic eggs. Eggs that you can get locally are also another wonderful option.
Pin for later!

Additional notes

Any type of cottage cheese should work, but I like to get small curd cottage cheese.

I recommend getting large, fresh eggs. Also, eggs that are either pasture-raised or free-range tend to taste better and be better for you! Another good option would be organic eggs. Eggs that you can get locally are also another wonderful option.

Let me know in the comment section how your egg muffins with cottage cheese turned out!

Try out a honey latte with your egg muffins!

Filed Under: Recipes

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Reader Interactions

Comments

  1. Lydia

    February 25, 2025 at 6:54 pm

    5 stars
    I hope you all enjoy this recipe!! Feel free to ask any questions here in the comments! 🙂

    Reply
  2. Stelios

    February 26, 2025 at 4:17 pm

    Egg muffins are delicious and so easy to make and yet, I forget about them every morning! I didn’t know that you could freeze them?!? Will definitely try out your recipe. Thanks for reminder. 😉

    Reply
  3. Danielle

    February 26, 2025 at 5:02 pm

    What a great recipe! I’m going to try it over the weekend so my family will be home to enjoy it.

    Reply
  4. Sarah

    February 26, 2025 at 9:44 pm

    These look interesting. I’ve never been a fan of cottage cheese but I do enjoy enjoy having egg things like this on hand for quick breakfasts or snacks. I will have to give these a try, I’m sure no matter what my husband will love them.

    Reply
  5. The happy homemaker

    February 27, 2025 at 11:38 pm

    Yum! These look so good! I’ve never used collagen or protein powder in egg muffins before. What a great idea! A sure way to get them packed with protein. Thanks for sharing

    Reply
  6. Jessica Savic

    February 28, 2025 at 12:24 am

    Those look delicious, I can’t wait to make them! My son is addicted to egg bites in the mornings and I’m always looking for new recipes to try out!

    Reply

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    March 5, 2025 at 1:30 pm

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Hi, thanks for visiting my blog!

Welcome to my blog, my name is Lydia. I am a mother, wife, and coffee enthusiast. Follow along for recipes, home décor inspiration, mothering/parenting tips, and more! You can find out more about me here.

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